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Software

  ( 16 )
Software aimed primarily for use in biochemistry or molecular biology research. Category also includes education software for biochemistry or molecular biology.


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1. Blue Tractor Software - Java based commercial software for DNA and Protein sequence analysis. Demo available.
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2. Cognia - Provides tools research analysis in genomics, signal transduction and molecular biology.
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3. DoMix Scientific Software - Offers software for sequence alignment, phylogenetic tree visualization, contig assembly and sequence proof reading
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4. EnzymeX - Free MacOS X program for molecular biologists that can be used to determine which restriction enzymes cut a DNA sequence. Includes list of all commercially available RE.
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5. FinchTV - Free DNA sequencing chromatogram trace viewer. Runs on Window, MacOS X, Linux & Solaris. Uses QT library.
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6. Molecular Biology Software Links - Links to biological software for DNA sequencing, molecule modeling, polymerase chain reaction and taxonomy.
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7. Phenosystems - Offers the Gensearch software to locate and analyse potential mutation locations.
8. Argo - Software developed by the Broad Institute for visualizing and manually annotating whole genomes. Free for research and educational users
9. BioKin, Ltd. - Offers script-driven programming for data analysis in viral dynamics, enzyme kinetics, receptor binding and drug discovery screening. Includes demo download, technical support and contacts for consulting in Pullman, Washington.
10. DNA Sequencing Software - software to improve the quality of DNA sequencing traces collected on the ABI 3700 and 3730 DNA sequencers.
11. eLABorate Packages - Programs designed as educational exercise for planning experiments in enzyme kinetics, protein-ligand binding, protein purification and related projects from the University of York, UK.
12. Insilico Biotechnology - Offering predictive software tools and services for metabolic engineering and drug discovery. Based in Germany.
13. JaMBW - Java based biologist's workbench by Luca I.G.Toldo.
14. Mekentosj software - Free MacOS X programs for molecular biologists. Offers 4Peaks - a DNA sequencing trace viewer, iRNAi - RNAi design, and LabAssistant - lab timer/organizer.
15. Rutgers Online Software Exchange - Offers free open source molecular biology software developed by scientists at Rutgers University, New Jersey.
16. SoftZymics - Package for statistical analysis of steady-state enzyme kinetic data, and presentation graphics, for Macintosh or Windows based computers. Previews, price and form to order from Princeton, New Jersey.

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